Eric C. Dykeman: search on Z-Library

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1

Degenerate RNA Packaging Signals in the Genome of Satellite Tobacco Necrosis Virus: Implications for the Assembly of a T = 1 Capsid

David H.J. Bunka, Stephen W. Lane, Claire L. Lane, Eric C. Dykeman, Robert J. Ford, Amy M. Barker, Reidun Twarock, Simon E.V. Phillips, Peter G. Stockley

Journal:

Journal of Molecular Biology

Year:

2011

Language:

english

File:

PDF, 2.19 MB

english, 2011

2

RNA Virus Evolution via a Quasispecies-Based Model Reveals a Drug Target with a High Barrier to Resistance

Bingham, Richard, Dykeman, Eric, Twarock, Reidun

Journal:

Year:

2017

Language:

english

File:

PDF, 1.34 MB

english, 2017

3

HBV RNA pre-genome encodes specific motifs that mediate interactions with the viral core protein that promote nucleocapsid assembly

Patel, Nikesh, White, Simon J., Thompson, Rebecca F., Bingham, Richard, Weiß, Eva U., Maskell, Daniel P., Zlotnick, Adam, Dykeman, Eric C., Tuma, Roman, Twarock, Reidun, Ranson, Neil A., Stockley, Pet

Journal:

Nature Microbiology

Year:

2017

Language:

english

File:

PDF, 5.30 MB

english, 2017

4

Conservation of Genetically-Embedded Virus Assembly Instructions: A Novel Route to Antiviral Therapy

Twarock, Reidun, Stockley, Peter G., Bingham, Richard J., Dykeman, Eric C., Dechant, Pierre-Philippe

Journal:

Proceedings (American Bar Association. Section of International and Comparative Law)

Year:

2020

File:

PDF, 133 KB

2020

5

Probing the low-frequency vibrational modes of viruses with Raman scattering—bacteriophage M13 in water

Tsen, Kong T., Dykeman, Eric C., Sankey, Otto F., Tsen, Shaw-Wei D., Lin, Nien-Tsung, Kiang, Juliann G.

Journal:

Journal of Biomedical Optics

Year:

2007

Language:

english

File:

PDF, 335 KB

english, 2007

6

Prediction of disease-related metabolites using bi-random walks

Lei, Xiujuan, Tie, Jiaojiao, Dykeman, Eric Charles

Journal:

Year:

2019

File:

PDF, 1.80 MB

2019

7

Genomic RNA folding mediates assembly of human parechovirus

Shakeel, Shabih, Dykeman, Eric C., White, Simon J., Ora, Ari, Cockburn, Joseph J.B., Butcher, Sarah J., Stockley, Peter G., Twarock, Reidun

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 2.03 MB

english, 2017

8

Normal mode analysis and applications in biological physics

Dykeman, Eric C, Sankey, Otto F

Journal:

Journal of Physics Condensed Matter

Year:

2010

Language:

english

File:

PDF, 3.66 MB

english, 2010

9

Structure and RNA Recognition in Recombinant STNV Capsids

Edward Victor Phillips, Simon, Lane, Stephen W., Dennis, Caitriona A., Lane, Claire L., Trinh, Chi H., Rizkallah, Pierre J., Bunka, David H., Dykeman, Eric C., Ford, Robert, Barker, Amy, Twarock, Reid

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 39 KB

english, 2012

10

Packaging Signals in Two Single-Stranded RNA Viruses Imply a Conserved Assembly Mechanism and Geometry of the Packaged Genome

Dykeman, Eric C., Stockley, Peter G., Twarock, Reidun

Journal:

Journal of Molecular Biology

Year:

2013

Language:

english

File:

PDF, 2.38 MB

english, 2013

11

Direct Evidence for Packaging Signal-Mediated Assembly of Bacteriophage MS2

Rolfsson, Óttar, Middleton, Stefani, Manfield, Iain W., White, Simon J., Fan, Baochang, Vaughan, Robert, Ranson, Neil A., Dykeman, Eric, Twarock, Reidun, Ford, James, Cheng Kao, C., Stockley, Peter G.

Journal:

Journal of Molecular Biology

Year:

2016

Language:

english

File:

PDF, 2.58 MB

english, 2016

12

Fast phage detection and quantification: An optical density-based approach

Rajnovic, Denis, Muñoz-Berbel, Xavier, Mas, Jordi, Dykeman, Eric Charles

Journal:

Year:

2019

Language:

english

File:

PDF, 1.61 MB

english, 2019

13

Simulations of impulsive laser scattering of biological protein assemblies: Application to M13 bacteriophage

Dykeman, Eric C., Benson, Daryn, Tsen, K.-T., Sankey, Otto F.

Journal:

Physical Review E

Year:

2009

Language:

english

File:

PDF, 874 KB

english, 2009

14

Raman intensity and spectra predictions for cylindrical viruses

Dykeman, Eric C., Sankey, Otto F., Tsen, Kong-Thon

Journal:

Physical Review E

Year:

2007

Language:

english

File:

PDF, 1.29 MB

english, 2007

15

A Model for Viral Assembly around an Explicit RNA Sequence Generates an Implicit Fitness Landscape

Dykeman, Eric Charles

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 1.87 MB

english, 2017

16

Revealing the density of encoded functions in a viral RNA

Patel, Nikesh, Dykeman, Eric C., Coutts, Robert H. A., Lomonossoff, George P., Rowlands, David J., Phillips, Simon E. V., Ranson, Neil, Twarock, Reidun, Tuma, Roman, Stockley, Peter G.

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.52 MB

english, 2015

17

Asymmetric Genome Organization in an RNA Virus Revealed via Graph-Theoretical Analysis of Tomographic Data

Geraets, James A., Dykeman, Eric C., Stockley, Peter G., Ranson, Neil A., Twarock, Reidun, Wilke, Claus O.

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 4.08 MB

english, 2015

18

A modelling paradigm for RNA virus assembly

Twarock, Reidun, Bingham, Richard J, Dykeman, Eric C, Stockley, Peter G

Journal:

Current Opinion in Virology

Year:

2018

Language:

english

File:

PDF, 1.89 MB

english, 2018

19

The Impact of Viral RNA on Assembly Pathway Selection

Victoria L. Morton, Eric C. Dykeman, Nicola J. Stonehouse, Alison E. Ashcroft, Reidun Twarock, Peter G. Stockley

Journal:

Journal of Molecular Biology

Year:

2010

Language:

english

File:

PDF, 1.26 MB

english, 2010

20

Bacteriophage MS2 genomic RNA encodes an assembly instruction manual for its capsid

Stockley, Peter G., White, Simon J., Dykeman, Eric, Manfield, Iain, Rolfsson, Ottar, Patel, Nikesh, Bingham, Richard, Barker, Amy, Wroblewski, Emma, Chandler-Bostock, Rebecca, Weiß, Eva U., Ranson, Ne

Journal:

Year:

2016

Language:

english

File:

PDF, 1.41 MB

english, 2016

21

Prediction of disease-related metabolites using bi-random walks

Lei, Xiujuan, Tie, Jiaojiao, Dykeman, Eric Charles

Journal:

Year:

2019

Language:

english

File:

PDF, 1.80 MB

english, 2019

22

Low Frequency Mechanical Modes of Viral Capsids: An Atomistic Approach

Dykeman, Eric C., Sankey, Otto F.

Journal:

Physical Review Letters

Year:

2008

Language:

english

File:

PDF, 682 KB

english, 2008

23

An implementation of the Gillespie algorithm for RNA kinetics with logarithmic time update

Dykeman, Eric C.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.73 MB

english, 2015

24

Atomistic modeling of the low-frequency mechanical modes and Raman spectra of icosahedral virus capsids

Dykeman, Eric C., Sankey, Otto F.

Journal:

Physical Review E

Year:

2010

Language:

english

File:

PDF, 605 KB

english, 2010

25

Theory of the low frequency mechanical modes and Raman spectra of the M13 bacteriophage capsid with atomic detail

Dykeman, Eric C, Sankey, Otto F

Journal:

Journal of Physics Condensed Matter

Year:

2009

Language:

english

File:

PDF, 962 KB

english, 2009

26

Cryo-EM structure and in vitro DNA packaging of a thermophilic virus with supersized T=7 capsids

Bayfield, Oliver W., Klimuk, Evgeny, Winkler, Dennis C., Hesketh, Emma L., Chechik, Maria, Cheng, Naiqian, Dykeman, Eric C., Minakhin, Leonid, Ranson, Neil A., Severinov, Konstantin, Steven, Alasdair

Journal:

Proceedings of the National Academy of Sciences

Year:

2019

Language:

english

File:

PDF, 1.97 MB

english, 2019

27

Observation of the low frequency vibrational modes of bacteriophage M13 in water by Raman spectroscopy

KT Tsen, Eric C Dykeman, Otto F Sankey, Nien-Tsung Lin, Shaw-Wei D Tsen…

Journal:

Virology Journal

Year:

2006

Language:

english

File:

PDF, 1.15 MB

english, 2006

28

The Prevalence and Incidence of Dementia with Lewy Bodies: a Systematic Review

Hogan, David B., Fiest, Kirsten M., Roberts, Jodie I., Maxwell, Colleen J., Dykeman, Jonathan, Pringsheim, Tamara, Steeves, Thomas, Smith, Eric E., Pearson, Dawn, Jetté, Nathalie

Journal:

Canadian Journal of Neurological Sciences / Journal Canadien des Sciences Neurologiques

Year:

2016

File:

PDF, 363 KB

2016

29

All-atom normal-mode analysis reveals an RNA-induced allostery in a bacteriophage coat protein

Dykeman, Eric C., Twarock, Reidun

Journal:

Physical Review E

Year:

2010

Language:

english

File:

PDF, 627 KB

english, 2010

30

Building a viral capsid in the presence of genomic RNA

Dykeman, Eric C., Stockley, Peter G., Twarock, Reidun

Journal:

Physical Review E

Year:

2013

Language:

english

File:

PDF, 2.36 MB

english, 2013

31

Raman scattering studies of the low-frequency vibrational modes of bacteriophage M13 in water—observation of an axial torsion mode

Tsen, K T, Dykeman, Eric C, Sankey, Otto F, Tsen, Shaw-Wei D, Lin, Nien-Tsung, Kiang, Juliann G

Journal:

Year:

2006

Language:

english

File:

PDF, 766 KB

english, 2006

32

A group theoretical approach to structural transitions of icosahedral quasicrystals and point arrays

Zappa, Emilio, Dykeman, Eric C, Geraets, James A, Twarock, Reidun

Journal:

Journal of Physics A Mathematical and Theoretical

Year:

2016

Language:

english

File:

PDF, 1.31 MB

english, 2016

33

On the subgroup structure of the hyperoctahedral group in six dimensions

Zappa, Emilio, Dykeman, Eric C., Twarock, Reidun

Journal:

Acta Crystallographica Section A Foundations and Advances

Year:

2014

Language:

english

File:

PDF, 514 KB

english, 2014

34

Cryo-EM structure and in vitro DNA packaging of a thermophilic virus with supersized T=7 capsids

Bayfield, Oliver W., Klimuk, Evgeny, Winkler, Dennis C., Hesketh, Emma L., Chechik, Maria, Cheng, Naiqian, Dykeman, Eric C., Minakhin, Leonid, Ranson, Neil A., Severinov, Konstantin, Steven, Alasdair

Journal:

Proceedings of the National Academy of Sciences

Year:

2019

File:

PDF, 1.97 MB

2019

35

Erratum: Genomic RNA folding mediates assembly of human parechovirus

Shakeel, Shabih, Dykeman, Eric C., White, Simon J., Ora, Ari, Cockburn, Joseph J. B., Butcher, Sarah J., Stockley, Peter G., Twarock, Reidun

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 142 KB

english, 2017

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